Lecture notes. Written from the material of MIT 6047, licensed CC BY-NC-SA 4.0. Notes, not a transcript — reorganised and rewritten, carrying the same licence.
MIT 6047¶
16 chapters, written from the course's material.
Contents¶
- Computational Biology: Course Overview
- Sequence Alignment and Dynamic Programming
- Alignment Recap and BLAST Seeding
- Recap: Markov Chains and HMMs
- Training Hidden Markov Models
- Gene Expression Clustering and Classification
- Challenges in Regulatory Genomics
- Evolutionary Signatures for Genome Annotation
- Molecular Evolution and Phylogenetics
- Disease Epigenomics and Genetic Epidemiology
- Genome Alignment and Evolution
- Genomics of Microbial Ecosystems
- HMM Posterior Decoding and Learning
- Clustering Gene Expression Data
- Naive Bayes and SVM Classification
- Motif Discovery: EM and Gibbs
Sources¶
The book carries CC BY-NC-SA 4.0.
| Offering | Original | Commit | Licence |
|---|---|---|---|
| MIT 6047 | ocw.mit.edu/courses/6-047-computational-biology-fall-2015/ | — | CC BY-NC-SA 4.0 |